PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00003907-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 303aa    MW: 33680.8 Da    PI: 6.5194
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00003907-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-082372154
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        r++ +  rE+ RRdr+N+ f eL  ++ ++     +K++K++iL  +++ +k+L
  WALNUT_00003907-RA 23 RKTQKAGREKLRRDRLNEQFVELGNVVDPS----RPKNDKSTILVDTIQVLKDL 72
                        5677788********************997....79**************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.5762272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-122291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-122290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.51E-52376No hitNo description
PfamPF000101.4E-62372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-42878IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MKKNTLTNYL CSQRYEVDCI SARKTQKAGR EKLRRDRLNE QFVELGNVVD PSRPKNDKST  60
ILVDTIQVLK DLASQINKLK AECSTLTEES HEAFLLSICL DLMQEKNDLR EEKASLKSDI  120
ENLNVQCQQR LGAMFPWAAI DHSVVMGPPS YQFPVPMPMP PGPIPMHPSM QPYPFFGNQN  180
PGLIPNPCST FVPYVPPNTS VERSARHASP RNRSPILDKQ DSRCKSSGKS KTGESEDSDN  240
VATNLELKTP GSTEDQDLSP EPKNSRKRWR EENSVTEGSS SSRSSSSVQD SSSNIVVGGI  300
ADE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015893436.11e-121PREDICTED: transcription factor bHLH121-like
SwissprotQ9LT233e-93BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A067K5Q21e-119A0A067K5Q2_JATCU; Uncharacterized protein
TrEMBLA0A061E6871e-119A0A061E687_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGSolyc01g111130.2.11e-105(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-78bHLH family protein